How to download and import UMLS database from NLM
Download the UMLS Knowledge Sources here http://www.nlm.nih.gov/research/umls/ by following the "Downloads" link and selecting UMLS. There are eight files to download:
2011AB.CHK
2011AB.MD5
2011AB-1-meta.nlm
2011AB-2-meta.nlm
2011AB-otherks.nlm
mmsys.zip
Copyright_Notice.txt
README.txt
But how do I get this into PHPMyAdmin / MySQL on my server for actual use?
Somehow it should have these tables (and more) inside it, which is what I want:
MRFILES
MRDOC
MRDEF
MRCOLS
MRSAB
MRSTY
MRCONSO
MRREL
These links may also be helpful in finding an answer:
http://mias.wikidot.com/onto:umls:mysql
http://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html
http://www.ncbi.nlm.nih.gov/books/NBK9685/
Download the UMLS Knowledge Sources here http://www.nlm.nih.gov/research/umls/ by following the "Downloads" link and selecting UMLS. There are eight files to download:
2011AB.CHK
2011AB.MD5
2011AB-1-meta.nlm
2011AB-2-meta.nlm
2011AB-otherks.nlm
mmsys.zip
Copyright_Notice.txt
README.txt
But how do I get this into PHPMyAdmin / MySQL on my server for actual use?
Somehow it should have these tables (and more) inside it, which is what I want:
MRFILES
MRDOC
MRDEF
MRCOLS
MRSAB
MRSTY
MRCONSO
MRREL
These links may also be helpful in finding an answer:
http://mias.wikidot.com/onto:umls:mysql
http://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/columns_data_elements.html
http://www.ncbi.nlm.nih.gov/books/NBK9685/
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